Detailed information of SNP:
|
SNP ID:
sf0821268052(Gbrowse)
Chromosome: chr08 Position: 21268052 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 91.99% | 8.01% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 490 | 87.76% | 12.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 51.14% | 48.86% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821268052 | C->T | INTERGENIC | None |