Detailed information of SNP:
|
SNP ID:
sf0821334509(Gbrowse)
Chromosome: chr08 Position: 21334509 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 63.91% | 36.09% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821334509 | G->A | INTERGENIC | None |