Detailed information of SNP:
|
SNP ID:
sf0821371268(Gbrowse)
Chromosome: chr08 Position: 21371268 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 93.63% | 6.37% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 477 | 84.07% | 15.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 80 | 31.25% | 68.75% |
| Japonica Intermediate | 63 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821371268 | G->T | LOC_Os08g34090(LOC_Os08g34090.1) | Synonymous |