Detailed information of SNP:
|
SNP ID:
sf0821382329(Gbrowse)
Chromosome: chr08 Position: 21382329 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1249 | 87.11% | 12.89% |
| All Indica | 633 | 75.36% | 24.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 291 | 78.69% | 21.31% |
| Indica II | 159 | 54.72% | 45.28% |
| Indica Intermediate | 183 | 87.98% | 12.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821382329 | G->A | INTERGENIC | None |