Detailed information of SNP:
|
SNP ID:
sf0821621275(Gbrowse)
Chromosome: chr08 Position: 21621275 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1223 | 50.61% | 49.39% |
| All Indica | 614 | 24.43% | 75.57% |
| All Japonica | 494 | 89.27% | 10.73% |
| Aus | 64 | 14.06% | 85.94% |
| Indica I | 297 | 21.89% | 78.11% |
| Indica II | 155 | 21.94% | 78.06% |
| Indica Intermediate | 162 | 31.48% | 68.52% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 48.65% | 51.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821621275 | T->C | INTERGENIC | None |