Detailed information of SNP:



SNP ID: sf0821749746(Gbrowse)

Chromosome: chr08

Position: 21749746
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1417 91.18% 8.82%
All Indica799 99.75% 0.25%
All Japonica497 76.46% 23.54%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate68 64.71% 35.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 85.00% 15.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0821749746 T->C INTERGENIC None