Detailed information of SNP:
|
SNP ID:
sf0821778579(Gbrowse)
Chromosome: chr08 Position: 21778579 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 63.35% | 36.65% |
| All Indica | 787 | 88.69% | 11.31% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 87.87% | 12.13% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 335 | 14.03% | 85.97% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821778579 | C->T | INTERGENIC | None |