Detailed information of SNP:
|
SNP ID:
sf0821791928(Gbrowse)
Chromosome: chr08 Position: 21791928 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1225 | 88.49% | 11.51% |
| All Indica | 740 | 86.49% | 13.51% |
| All Japonica | 371 | 92.18% | 7.82% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 341 | 87.98% | 12.02% |
| Indica II | 211 | 87.20% | 12.80% |
| Indica Intermediate | 188 | 82.98% | 17.02% |
| Temperate Japonica | 301 | 98.01% | 1.99% |
| Tropical Japonica | 38 | 57.89% | 42.11% |
| Japonica Intermediate | 32 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821791928 | A->T | INTERGENIC | None |