Detailed information of SNP:
|
SNP ID:
sf0821909147(Gbrowse)
Chromosome: chr08 Position: 21909147 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 50.78% | 49.22% |
| All Indica | 788 | 14.34% | 85.66% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 15.26% | 84.74% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 209 | 13.40% | 86.60% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821909147 | C->A | INTERGENIC | None |