Detailed information of SNP:
|
SNP ID:
sf0821920926(Gbrowse)
Chromosome: chr08 Position: 21920926 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 75.57% | 24.43% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 490 | 32.04% | 67.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 16.52% | 83.48% |
| Tropical Japonica | 90 | 73.33% | 26.67% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821920926 | A->G | LOC_Os08g34850(LOC_Os08g34850.1) | INTRON |