Detailed information of SNP:
|
SNP ID:
sf0821927018(Gbrowse)
Chromosome: chr08 Position: 21927018 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.62% | 4.38% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 88.87% | 11.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821927018 | C->A | LOC_Os08g34850(LOC_Os08g34850.1) | Non-Synonymous SNP |