Detailed information of SNP:
|
SNP ID:
sf0821927068(Gbrowse)
Chromosome: chr08 Position: 21927068 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 91.77% | 8.23% |
| All Indica | 796 | 94.72% | 5.28% |
| All Japonica | 491 | 87.37% | 12.63% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 89 | 44.94% | 55.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821927068 | C->T | LOC_Os08g34850(LOC_Os08g34850.1) | Synonymous |