Detailed information of SNP:
|
SNP ID:
sf0821927362(Gbrowse)
Chromosome: chr08 Position: 21927362 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 95.62% | 4.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 88.48% | 11.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821927362 | G->A | LOC_Os08g34850(LOC_Os08g34850.1) | Synonymous |