Detailed information of SNP:
|
SNP ID:
sf0821929903(Gbrowse)
Chromosome: chr08 Position: 21929903 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 88.94% | 11.06% |
| All Indica | 772 | 80.18% | 19.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 78.61% | 21.39% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 202 | 64.85% | 35.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821929903 | G->A | LOC_Os08g34850(LOC_Os08g34850.1) | Non-Synonymous SNP |