Detailed information of SNP:
|
SNP ID:
sf0821967499(Gbrowse)
Chromosome: chr08 Position: 21967499 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 70.64% | 29.36% |
| All Indica | 705 | 46.24% | 53.76% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 313 | 42.49% | 57.51% |
| Indica II | 199 | 31.16% | 68.84% |
| Indica Intermediate | 193 | 67.88% | 32.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821967499 | C->A | INTERGENIC | None |