Detailed information of SNP:
|
SNP ID:
sf0821979064(Gbrowse)
Chromosome: chr08 Position: 21979064 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 71.88% | 28.12% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821979064 | G->A | LOC_Os08g34900(LOC_Os08g34900.1) | UTR_3_PRIME |
| sf0821979064 | G->A | LOC_Os08g34910(LOC_Os08g34910.1) | Synonymous |