Detailed information of SNP:
|
SNP ID:
sf0821982596(Gbrowse)
Chromosome: chr08 Position: 21982596 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 97.03% | 2.97% |
| All Indica | 769 | 95.71% | 4.29% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 13 | 53.85% | 46.15% |
| Indica I | 358 | 99.72% | 0.28% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 201 | 94.53% | 5.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 2 | 100.00% | 0.00% |
| Intermediate | 34 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0821982596 | C->T | INTERGENIC | None |