Detailed information of SNP:
|
SNP ID:
sf0822103054(Gbrowse)
Chromosome: chr08 Position: 22103054 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1311 | 73.61% | 26.39% |
| All Indica | 692 | 51.45% | 48.55% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 322 | 51.24% | 48.76% |
| Indica II | 194 | 32.99% | 67.01% |
| Indica Intermediate | 176 | 72.16% | 27.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822103054 | T->G | INTERGENIC | None |