Detailed information of SNP:
|
SNP ID:
sf0822228226(Gbrowse)
Chromosome: chr08 Position: 22228226 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 53.64% | 46.36% |
| All Indica | 767 | 89.44% | 10.56% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 361 | 88.37% | 11.63% |
| Indica II | 203 | 92.61% | 7.39% |
| Indica Intermediate | 203 | 88.18% | 11.82% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822228226 | T->C | INTERGENIC | None |