Detailed information of SNP:
|
SNP ID:
sf0822228228(Gbrowse)
Chromosome: chr08 Position: 22228228 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 52.76% | 47.24% |
| All Indica | 773 | 87.71% | 12.29% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 362 | 87.29% | 12.71% |
| Indica II | 205 | 91.22% | 8.78% |
| Indica Intermediate | 206 | 84.95% | 15.05% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822228228 | C->T | INTERGENIC | None |