Detailed information of SNP:
|
SNP ID:
sf0822234973(Gbrowse)
Chromosome: chr08 Position: 22234973 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1309 | 72.12% | 27.88% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 396 | 20.45% | 79.55% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 276 | 10.87% | 89.13% |
| Tropical Japonica | 71 | 54.93% | 45.07% |
| Japonica Intermediate | 49 | 24.49% | 75.51% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822234973 | T->C | INTERGENIC | None |