Detailed information of SNP:
|
SNP ID:
sf0822296476(Gbrowse)
Chromosome: chr08 Position: 22296476 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 95.16% | 4.84% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 465 | 92.26% | 7.74% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 313 | 94.25% | 5.75% |
| Tropical Japonica | 88 | 93.18% | 6.82% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822296476 | C->T | LOC_Os08g35370(LOC_Os08g35370.1) | INTRON |