Detailed information of SNP:
|
SNP ID:
sf0822307993(Gbrowse)
Chromosome: chr08 Position: 22307993 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1184 | 81.93% | 18.07% |
| All Indica | 749 | 96.66% | 3.34% |
| All Japonica | 327 | 52.29% | 47.71% |
| Aus | 59 | 55.93% | 44.07% |
| Indica I | 353 | 96.88% | 3.12% |
| Indica II | 203 | 97.04% | 2.96% |
| Indica Intermediate | 193 | 95.85% | 4.15% |
| Temperate Japonica | 202 | 67.33% | 32.67% |
| Tropical Japonica | 76 | 26.32% | 73.68% |
| Japonica Intermediate | 49 | 30.61% | 69.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822307993 | A->G | LOC_Os08g35390(LOC_Os08g35390.1) | Non-Synonymous SNP |