Detailed information of SNP:
|
SNP ID:
sf0822465760(Gbrowse)
Chromosome: chr08 Position: 22465760 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1175 | 94.13% | 5.87% |
| All Indica | 578 | 89.97% | 10.03% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 53 | 92.45% | 7.55% |
| Indica I | 252 | 89.68% | 10.32% |
| Indica II | 159 | 89.94% | 10.06% |
| Indica Intermediate | 167 | 90.42% | 9.58% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822465760 | C->A | INTERGENIC | None |