Detailed information of SNP:
|
SNP ID:
sf0822542392(Gbrowse)
Chromosome: chr08 Position: 22542392 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 97.41% | 2.59% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 432 | 91.90% | 8.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 88.93% | 11.07% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822542392 | G->A | INTERGENIC | None |