Detailed information of SNP:
|
SNP ID:
sf0822598008(Gbrowse)
Chromosome: chr08 Position: 22598008 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.48% | 39.52% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822598008 | C->G | INTERGENIC | None |