Detailed information of SNP:
|
SNP ID:
sf0822598094(Gbrowse)
Chromosome: chr08 Position: 22598094 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.55% | 39.45% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822598094 | C->A | INTERGENIC | None |