Detailed information of SNP:
|
SNP ID:
sf0822639086(Gbrowse)
Chromosome: chr08 Position: 22639086 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 91.86% | 8.14% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 492 | 77.24% | 22.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 70.61% | 29.39% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822639086 | T->A | LOC_Os08g35900(LOC_Os08g35900.1) | INTRON |
| sf0822639086 | T->A | LOC_Os08g35900(LOC_Os08g35900.2) | INTRON |