Detailed information of SNP:
|
SNP ID:
sf0822649507(Gbrowse)
Chromosome: chr08 Position: 22649507 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 65.24% | 34.76% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 486 | 4.32% | 95.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 2.71% | 97.29% |
| Tropical Japonica | 89 | 11.24% | 88.76% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822649507 | G->C | LOC_Os08g35910(LOC_Os08g35910.1) | INTRON |