Detailed information of SNP:
|
SNP ID:
sf0822780629(Gbrowse)
Chromosome: chr08 Position: 22780629 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822780629 | G->A | INTERGENIC | None |