Detailed information of SNP:
|
SNP ID:
sf0822913981(Gbrowse)
Chromosome: chr08 Position: 22913981 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 92.81% | 7.19% |
| All Indica | 725 | 88.97% | 11.03% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 334 | 90.12% | 9.88% |
| Indica II | 195 | 91.28% | 8.72% |
| Indica Intermediate | 196 | 84.69% | 15.31% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822913981 | C->T | INTERGENIC | None |