Detailed information of SNP:
|
SNP ID:
sf0822933602(Gbrowse)
Chromosome: chr08 Position: 22933602 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 89.66% | 10.34% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 378 | 65.87% | 34.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 252 | 59.92% | 40.08% |
| Tropical Japonica | 78 | 87.18% | 12.82% |
| Japonica Intermediate | 48 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0822933602 | G->A | INTERGENIC | None |