Detailed information of SNP:
|
SNP ID:
sf0823003443(Gbrowse)
Chromosome: chr08 Position: 23003443 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 89.60% | 10.40% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 379 | 71.77% | 28.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 253 | 66.01% | 33.99% |
| Tropical Japonica | 73 | 91.78% | 8.22% |
| Japonica Intermediate | 53 | 71.70% | 28.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823003443 | A->G | INTERGENIC | None |