Detailed information of SNP:
|
SNP ID:
sf0823104058(Gbrowse)
Chromosome: chr08 Position: 23104058 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 85.70% | 14.30% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 408 | 54.90% | 45.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 263 | 35.74% | 64.26% |
| Tropical Japonica | 85 | 95.29% | 4.71% |
| Japonica Intermediate | 60 | 81.67% | 18.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823104058 | G->C | LOC_Os08g36620(LOC_Os08g36620.1) | INTRON |