Detailed information of SNP:
SNP ID:
sf0823135114(Gbrowse)
Chromosome: chr08 Position: 23135114 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1419 | 92.04% | 7.96% |
All Indica | 799 | 98.62% | 1.38% |
All Japonica | 497 | 80.68% | 19.32% |
Aus | 67 | 97.01% | 2.99% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 74.03% | 25.97% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 86.76% | 13.24% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0823135114 | G->A | LOC_Os08g36670(LOC_Os08g36670.1) | INTRON |