Detailed information of SNP:



SNP ID: sf0823135114(Gbrowse)

Chromosome: chr08

Position: 23135114
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 92.04% 7.96%
All Indica799 98.62% 1.38%
All Japonica497 80.68% 19.32%
Aus67 97.01% 2.99%
Indica I375 98.13% 1.87%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 74.03% 25.97%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0823135114 G->A LOC_Os08g36670(LOC_Os08g36670.1) INTRON