Detailed information of SNP:
|
SNP ID:
sf0823141363(Gbrowse)
Chromosome: chr08 Position: 23141363 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 83.58% | 16.42% |
| All Indica | 740 | 70.95% | 29.05% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 339 | 77.29% | 22.71% |
| Indica II | 206 | 44.17% | 55.83% |
| Indica Intermediate | 195 | 88.21% | 11.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823141363 | C->A | LOC_Os08g36670(LOC_Os08g36670.1) | Non-Synonymous SNP |