Detailed information of SNP:
|
SNP ID:
sf0823147121(Gbrowse)
Chromosome: chr08 Position: 23147121 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 60.55% | 39.45% |
| All Indica | 790 | 94.94% | 5.06% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823147121 | T->C | LOC_Os08g36680(LOC_Os08g36680.1) | INTRON |
| sf0823147121 | T->C | LOC_Os08g36680(LOC_Os08g36680.2) | INTRON |