Detailed information of SNP:
|
SNP ID:
sf0823210628(Gbrowse)
Chromosome: chr08 Position: 23210628 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 57.04% | 42.96% |
| All Indica | 795 | 91.57% | 8.43% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823210628 | G->T | LOC_Os08g36760(LOC_Os08g36760.1) | Non-Synonymous SNP |