Detailed information of SNP:
|
SNP ID:
sf0823349687(Gbrowse)
Chromosome: chr08 Position: 23349687 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1331 | 67.54% | 32.46% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 410 | 1.71% | 98.29% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 275 | 1.82% | 98.18% |
| Tropical Japonica | 80 | 0.00% | 100.00% |
| Japonica Intermediate | 55 | 3.64% | 96.36% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823349687 | G->A | INTERGENIC | None |