Detailed information of SNP:
|
SNP ID:
sf0823413974(Gbrowse)
Chromosome: chr08 Position: 23413974 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 89.56% | 10.44% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 367 | 65.12% | 34.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 243 | 60.08% | 39.92% |
| Tropical Japonica | 68 | 63.24% | 36.76% |
| Japonica Intermediate | 56 | 89.29% | 10.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823413974 | G->A | INTERGENIC | None |