Detailed information of SNP:
|
SNP ID:
sf0823453752(Gbrowse)
Chromosome: chr08 Position: 23453752 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 61.66% | 38.34% |
| All Indica | 792 | 97.73% | 2.27% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823453752 | G->T | INTERGENIC | None |