Detailed information of SNP:
|
SNP ID:
sf0823475172(Gbrowse)
Chromosome: chr08 Position: 23475172 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.08% | 46.92% |
| All Indica | 796 | 92.09% | 7.91% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823475172 | C->T | INTERGENIC | None |