Detailed information of SNP:
|
SNP ID:
sf0823523119(Gbrowse)
Chromosome: chr08 Position: 23523119 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823523119 | T->G | INTERGENIC | None |