Detailed information of SNP:
|
SNP ID:
sf0823647471(Gbrowse)
Chromosome: chr08 Position: 23647471 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 66.74% | 33.26% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 11.29% | 88.71% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823647471 | G->A | LOC_Os08g37390(LOC_Os08g37390.1) | Non-Synonymous SNP |