Detailed information of SNP:
|
SNP ID:
sf0823686390(Gbrowse)
Chromosome: chr08 Position: 23686390 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 82.00% | 18.00% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 446 | 70.40% | 29.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 295 | 72.20% | 27.80% |
| Tropical Japonica | 89 | 73.03% | 26.97% |
| Japonica Intermediate | 62 | 58.06% | 41.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823686390 | C->T | INTERGENIC | None |