Detailed information of SNP:
|
SNP ID:
sf0823784033(Gbrowse)
Chromosome: chr08 Position: 23784033 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 93.06% | 6.94% |
| All Indica | 791 | 98.10% | 1.90% |
| All Japonica | 455 | 82.86% | 17.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 295 | 80.34% | 19.66% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823784033 | T->C | LOC_Os08g37560(LOC_Os08g37560.1) | Non-Synonymous SNP |