Detailed information of SNP:
|
SNP ID:
sf0823799428(Gbrowse)
Chromosome: chr08 Position: 23799428 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 82.79% | 17.21% |
| All Indica | 777 | 98.97% | 1.03% |
| All Japonica | 475 | 68.21% | 31.79% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 362 | 99.45% | 0.55% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 318 | 77.67% | 22.33% |
| Tropical Japonica | 91 | 53.85% | 46.15% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823799428 | A->G | INTERGENIC | None |