Detailed information of SNP:
|
SNP ID:
sf0823802990(Gbrowse)
Chromosome: chr08 Position: 23802990 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 99.27% | 0.73% |
| All Indica | 780 | 100.00% | 0.00% |
| All Japonica | 471 | 97.88% | 2.12% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 364 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 99.69% | 0.31% |
| Tropical Japonica | 85 | 97.65% | 2.35% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823802990 | C->A | INTERGENIC | None |