Detailed information of SNP:
|
SNP ID:
sf0823869120(Gbrowse)
Chromosome: chr08 Position: 23869120 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 97.53% | 2.47% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823869120 | C->T | LOC_Os08g37700(LOC_Os08g37700.2) | UTR_3_PRIME |
| sf0823869120 | C->T | LOC_Os08g37700(LOC_Os08g37700.1) | UTR_3_PRIME |
| sf0823869120 | C->T | LOC_Os08g37700(LOC_Os08g37700.3) | UTR_3_PRIME |