Detailed information of SNP:
|
SNP ID:
sf0823902893(Gbrowse)
Chromosome: chr08 Position: 23902893 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 86.84% | 13.16% |
| All Indica | 772 | 99.09% | 0.91% |
| All Japonica | 471 | 79.62% | 20.38% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 361 | 99.72% | 0.28% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 201 | 99.00% | 1.00% |
| Temperate Japonica | 316 | 97.78% | 2.22% |
| Tropical Japonica | 89 | 32.58% | 67.42% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0823902893 | T->C | LOC_Os08g37740(LOC_Os08g37740.1) | INTRON |